STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1617KEGG: son:SO2115 asparaginase family protein. (327 aa)    
Predicted Functional Partners:
Sama_2101
KEGG: son:SO2767 asparagine synthetase B, glutamine-hydrolyzing.
     
 0.909
Sama_1722
KEGG: son:SO2421 L-asparaginase I.
     
 0.908
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
    
  0.905
Sama_1733
Aminotransferase; KEGG: sfr:Sfri_2126 aspartate transaminase.
   
  0.904
Sama_0789
Fumarase; KEGG: hch:HCH_01841 aspartate ammonia-lyase.
     
 0.901
argG
KEGG: son:SO0278 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
Sama_0840
KEGG: son:SO1301 aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
     
  0.900
Sama_0873
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
  0.900
Sama_2886
KEGG: dps:DP1920 hypothetical protein.
     
  0.900
Sama_3201
KEGG: sdn:Sden_0462 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
 
 0.844
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.