STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (636 aa)    
Predicted Functional Partners:
aguA
KEGG: son:SO0887 hypothetical protein.
 
  
 0.959
Sama_1627
KEGG: sdn:Sden_1055 arginine N-succinyltransferase.
     
  0.900
Sama_3010
KEGG: son:SO0618 arginine N-succinyltransferase.
     
  0.900
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
    
 0.894
argH
KEGG: sdn:Sden_0254 argininosuccinate lyase.
     
 0.831
Sama_1962
KEGG: sdn:Sden_2279 adenosylmethionine decarboxylase.
     
 0.616
Sama_1981
[Acyl-carrier-protein] S-malonyltransferase; KEGG: son:SO2777 malonyl CoA-acyl carrier protein transacylase.
   
    0.505
speE-2
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.499
Sama_3201
KEGG: sdn:Sden_0462 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
  
  
 0.492
Sama_1965
KEGG: shm:Shewmr7_1631 hypothetical protein.
       0.467
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.