STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2002Sortase (surface protein transpeptidase)-like protein; KEGG: son:SO2196 LPXTG-site transpeptidase family protein. (214 aa)    
Predicted Functional Partners:
Sama_2003
KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein.
 
  
 0.974
Sama_2006
KEGG: son:SO2192 sensor histidine kinase.
 
    0.802
Sama_2004
KEGG: ppr:PBPRB0759 hypothetical OmpA family protein.
 
    0.771
Sama_2005
Two component transcriptional regulator, winged helix family; KEGG: son:SO2193 DNA-binding response regulator.
 
     0.735
Sama_1827
KEGG: son:SO2504 hypothetical protein.
      
 0.538
Sama_3624
KEGG: son:SO0130 protease, putative.
  
   
 0.522
Sama_3108
KEGG: vvu:VV20803 uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
   
 0.472
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.