Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Sama_2002Sortase (surface protein transpeptidase)-like protein; KEGG: son:SO2196 LPXTG-site transpeptidase family protein. (214 aa)    
Predicted Functional Partners:
Sama_2003
KEGG: son:SO2195 inter-alpha-trypsin inhibitor domain protein.
 
  
 0.979
Sama_2006
KEGG: son:SO2192 sensor histidine kinase.
 
     0.800
Sama_2004
KEGG: ppr:PBPRB0759 hypothetical OmpA family protein.
 
    0.771
Sama_2005
Two component transcriptional regulator, winged helix family; KEGG: son:SO2193 DNA-binding response regulator.
 
     0.734
Sama_1827
KEGG: son:SO2504 hypothetical protein.
      
 0.574
birA
Biotin--(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
      
 0.567
Sama_3108
KEGG: vvu:VV20803 uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
     0.505
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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