STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2102KEGG: sfr:Sfri_1599 protein of unknown function DUF1289. (64 aa)    
Predicted Functional Partners:
Sama_2103
KEGG: cvi:CV0893 probable 5-carboxymethyl-2-hydroxymuconate D-isomerase.
       0.773
Sama_2104
KEGG: sdn:Sden_2036 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.773
Sama_2105
KEGG: son:SO2794 hypothetical protein.
       0.586
Sama_1179
KEGG: son:SO1739 hypothetical protein.
  
     0.552
Sama_0680
KEGG: son:SO4705 transcriptional regulator, putative.
  
     0.524
Sama_2916
KEGG: hch:HCH_04108 predicted permease, DMT superfamily.
  
     0.460
Sama_2106
KEGG: sdn:Sden_2038 hypothetical protein.
       0.443
Sama_0620
KEGG: sdn:Sden_0607 hypothetical protein.
  
     0.436
Sama_0149
KEGG: sdn:Sden_0116 hypothetical protein.
  
     0.422
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.