Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sama_0753 | Sama_2165 | KEGG: pfo:Pfl_2272 hypothetical protein. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.742 |
Sama_1209 | Sama_1210 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1779 decaheme cytochrome c. | 0.410 |
Sama_1209 | Sama_1211 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1780 decaheme cytochrome c MtrF. | 0.507 |
Sama_1209 | Sama_1603 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1854 hypothetical protein. | 0.772 |
Sama_1209 | Sama_2165 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.720 |
Sama_1209 | Sama_3352 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO0306 hypothetical protein. | 0.436 |
Sama_1210 | Sama_1209 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1779 decaheme cytochrome c. | 0.410 |
Sama_1210 | Sama_1211 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1780 decaheme cytochrome c MtrF. | 0.678 |
Sama_1210 | Sama_1603 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO1854 hypothetical protein. | 0.773 |
Sama_1210 | Sama_2165 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.706 |
Sama_1210 | Sama_3352 | KEGG: son:SO1779 decaheme cytochrome c. | KEGG: son:SO0306 hypothetical protein. | 0.453 |
Sama_1211 | Sama_1209 | KEGG: son:SO1780 decaheme cytochrome c MtrF. | KEGG: son:SO1779 decaheme cytochrome c. | 0.507 |
Sama_1211 | Sama_1210 | KEGG: son:SO1780 decaheme cytochrome c MtrF. | KEGG: son:SO1779 decaheme cytochrome c. | 0.678 |
Sama_1211 | Sama_1603 | KEGG: son:SO1780 decaheme cytochrome c MtrF. | KEGG: son:SO1854 hypothetical protein. | 0.773 |
Sama_1211 | Sama_2165 | KEGG: son:SO1780 decaheme cytochrome c MtrF. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.697 |
Sama_1211 | Sama_3352 | KEGG: son:SO1780 decaheme cytochrome c MtrF. | KEGG: son:SO0306 hypothetical protein. | 0.439 |
Sama_1436 | Sama_2165 | KEGG: son:SO1939 hypothetical protein. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.732 |
Sama_1485 | Sama_2165 | Arylesterase; KEGG: sfr:Sfri_2568 arylesterase. | KEGG: sfr:Sfri_2673 hypothetical protein. | 0.794 |
Sama_1485 | Sama_2630 | Arylesterase; KEGG: sfr:Sfri_2568 arylesterase. | KEGG: noc:Noc_1154 lipolytic enzyme, G-D-S-L. | 0.925 |
Sama_1603 | Sama_1209 | KEGG: son:SO1854 hypothetical protein. | KEGG: son:SO1779 decaheme cytochrome c. | 0.772 |
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