STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2181KEGG: son:SO3102 AcrA/AcrE family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (331 aa)    
Predicted Functional Partners:
Sama_2182
KEGG: son:SO3103 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.960
Sama_2183
KEGG: son:SO3104 hypothetical protein.
 
     0.852
Sama_1905
KEGG: son:SO1882 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.764
Sama_3269
KEGG: vpa:VP0038 putative multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.741
Sama_1420
KEGG: son:SO1924 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.670
Sama_3188
KEGG: son:SO0520 heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.653
Sama_1419
KEGG: son:SO1923 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.611
Sama_3268
KEGG: son:SO4327 HlyD family secretion domain protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.604
Sama_3554
KEGG: son:SO4692 AcrB/AcrD/AcrF family protein.
  
   0.600
Sama_0140
KEGG: sdn:Sden_3430 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   0.590
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.