STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2210KEGG: son:SO3135 C4-dicarboxylate transporter, putative. (213 aa)    
Predicted Functional Partners:
Sama_2211
KEGG: son:SO3136 C4-dicarboxylate transport protein.
 
 
 0.994
Sama_2209
KEGG: son:SO3134 C4-dicarboxylate-binding periplasmic protein.
 
  
 0.965
Sama_2212
KEGG: son:SO3136.1 hypothetical two-component sensor histidine kinase protein.
 
     0.625
Sama_2213
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: son:SO3138 C4-dicarboxylate transport transcriptional regulatory protein.
       0.536
Sama_1027
KEGG: son:SO3461 transporter, putative.
 
     0.420
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.