STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2323KEGG: son:SO3255 flagellar biosynthetic protein FlgN. (144 aa)    
Predicted Functional Partners:
Sama_2309
KEGG: sdn:Sden_1312 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
 
 0.985
Sama_2322
Anti-sigma-28 factor, FlgM; KEGG: son:SO3254 negative regulator of flagellin synthesis FlgM.
  
  
 0.976
Sama_2308
KEGG: son:SO3239 flagellar hook-associated protein FlgL.
  
 
 0.922
Sama_2302
KEGG: son:SO3233 flagellar protein FliS.
  
  
 0.894
Sama_2321
Flagellar basal-body P-ring formation protein FlgA, putative; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
  
 0.883
Sama_2318
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
  
 0.864
Sama_2310
KEGG: son:SO3241 flagellar protein FlgJ.
  
  
 0.860
Sama_2304
Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.853
Sama_2317
KEGG: son:SO3249 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
  
 0.840
Sama_2290
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.808
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.