STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2389KEGG: son:SO2455 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
Sama_2390
KEGG: rso:RSc1153 putative transmembrane efflux transmembrane protein.
 
     0.725
Sama_2662
KEGG: bbr:BB1160 putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.715
Sama_2928
KEGG: son:SO1046 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.677
Sama_2797
KEGG: sdn:Sden_3019 regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.624
Sama_0274
KEGG: vpa:VPA0175 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.603
Sama_2215
KEGG: son:SO1916 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.593
Sama_1501
KEGG: vch:VCA0542 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.568
Sama_1882
KEGG: son:SO2561 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.551
Sama_0860
KEGG: son:SO1328 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.522
Sama_1783
KEGG: son:SO2374 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.520
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.