STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2393KEGG: ccr:CC0579 TonB-dependent receptor. (866 aa)    
Predicted Functional Partners:
Sama_0295
KEGG: pat:Patl_0122 TonB-dependent receptor.
  
     0.733
Sama_2392
KEGG: vpa:VPA1014 putative S-transferase.
 
     0.707
Sama_2394
Cyanophycinase-related exopeptidase-like protein; KEGG: ilo:IL2428 secreted protein related to cyanophycinase CphE.
 
     0.704
Sama_1192
KEGG: cps:CPS_0238 TonB-dependent receptor.
  
     0.633
Sama_2391
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
  
    0.622
Sama_0521
KEGG: cps:CPS_0936 TonB-dependent receptor.
  
  
 0.618
Sama_1397
KEGG: sdn:Sden_2610 TonB-dependent receptor.
  
     0.600
Sama_1936
KEGG: son:SO2583 hypothetical protein.
  
     0.595
Sama_3457
TonB2 protein, putative; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.565
Sama_0344
KEGG: sdn:Sden_0345 PepSY-associated TM helix.
 
     0.556
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.