STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2414KEGG: she:Shewmr4_1145 OsmC family protein. (145 aa)    
Predicted Functional Partners:
Sama_2598
KEGG: son:SO1158 Dps family protein; Belongs to the Dps family.
  
  
 0.605
bamE
Small protein A; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
  
 0.496
Sama_2379
Putative signal transduction protein; KEGG: sdn:Sden_1247 hypothetical protein.
  
    0.492
Sama_0044
KEGG: son:SO0033 LysM domain protein.
   
  
 0.483
Sama_0055
KEGG: son:SO0044 hypothetical protein.
  
  
 0.481
msrA-2
protein-methionine-S-oxide reductase, PilB family; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.473
Sama_1921
Putative serine protein kinase, PrkA; KEGG: son:SO2882 hypothetical Ser protein kinas.
   
    0.470
Sama_3265
Diguanylate cyclase/phosphodiesterase with GAF sensor; KEGG: son:SO4324 GGDEF domain protein protein.
   
  
 0.439
Sama_1821
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: son:SO2498 sensory box protein.
   
    0.420
Sama_0833
KEGG: son:SO1295 major outer membrane lipoprotein, putative.
   
    0.416
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.