STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2637KEGG: son:SO1275 succinate-semialdehyde dehydrogenase (NADP+); Belongs to the aldehyde dehydrogenase family. (480 aa)    
Predicted Functional Partners:
Sama_2636
KEGG: son:SO1276 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.979
Sama_0611
KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.917
Sama_1425
KEGG: son:SO1928 succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.917
Sama_3220
KEGG: son:SO0398 fumarate reductase flavoprotein subunit.
   
 0.917
Sama_1422
KEGG: son:SO1926 citrate synthase; Belongs to the citrate synthase family.
  
 0.908
Sama_1426
KEGG: son:SO1929 succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.907
Sama_3219
Succinate dehydrogenase subunit B; KEGG: son:SO0399 fumarate reductase iron-sulfur protein.
   
 
 0.907
Sama_1423
KEGG: son:SO1927 succinate dehydrogenase, cytochrome b556 subunit.
   
 
  0.903
Sama_1424
Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
 0.903
Sama_3221
KEGG: son:SO0397 fumarate reductase cytochrome B subunit.
   
 
  0.903
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.