STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2640KEGG: sdn:Sden_3029 binding-protein-dependent transport systems inner membrane component. (303 aa)    
Predicted Functional Partners:
Sama_2639
KEGG: sdn:Sden_3028 binding-protein-dependent transport systems inner membrane component.
 
 0.999
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.997
Sama_2642
Polyamine ABC transporter, periplasmic polyamine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.997
Sama_0668
KEGG: son:SO0742 iron(III) ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.804
Sama_3531
KEGG: son:SO4446 molybdenum ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.762
Sama_2638
KEGG: son:SO1274 probable oxidoreductase.
 
    0.613
Sama_2644
L-glutamine synthetase; KEGG: sdn:Sden_3032 glutamate--ammonia ligase; Belongs to the glutamine synthetase family.
 
   
 0.610
Sama_2643
Aminotransferase; KEGG: cps:CPS_4663 aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.485
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.438
Sama_2636
KEGG: son:SO1276 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.432
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.