STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2727KEGG: ppr:PBPRB1899 hypothetical protein; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
Sama_3539
KEGG: cps:CPS_2971 substrate-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.769
Sama_3359
KEGG: son:SO0295 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.762
Sama_2797
KEGG: sdn:Sden_3019 regulatory protein, LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.751
Sama_3605
KEGG: rru:Rru_A0785 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.749
Sama_2215
KEGG: son:SO1916 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.732
Sama_1501
KEGG: vch:VCA0542 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.726
Sama_1882
KEGG: son:SO2561 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.715
Sama_0860
KEGG: son:SO1328 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.692
Sama_1570
KEGG: son:SO1965 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.674
Sama_1997
KEGG: son:SO2202 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.667
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.