STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2733Transcriptional regulator, MerR family; KEGG: sdn:Sden_1798 regulatory protein, MerR. (135 aa)    
Predicted Functional Partners:
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
   
 
 0.851
Sama_2734
KEGG: vpa:VPA0296 putative oxidoreductase protein.
 
   0.755
Sama_0396
Transcriptional regulator, MerR family; KEGG: son:SO0443 zinc-responsive transcriptional regulator.
  
     0.739
Sama_0747
Signal transduction histidine kinase-like protein; KEGG: xcb:XC_1756 two-component system sensor protein.
   
 
 0.734
Sama_2732
KEGG: sdn:Sden_1799 NAD(P)H dehydrogenase (quinone).
       0.680
Sama_0580
KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase.
   
   0.613
rpoB
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.528
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.526
Sama_2933
KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein.
  
 
 0.526
Sama_2402
KEGG: son:SO1413 tetraheme cytochrome c, putative.
  
 
 0.522
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.