STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2863KEGG: sdn:Sden_2849 protein of unknown function DUF214. (435 aa)    
Predicted Functional Partners:
Sama_2864
KEGG: sdn:Sden_2850 ABC transporter related.
 
 
 0.978
Sama_2862
KEGG: sdn:Sden_2848 protein of unknown function DUF214.
 
     0.953
Sama_2865
KEGG: son:SO3694 HlyD family secretion protein.
 
  
 0.925
Sama_2860
KEGG: sdn:Sden_2846 ATP-binding region, ATPase-like protein.
 
     0.922
Sama_1468
KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.821
Sama_2861
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: son:SO3689 sigma-54 dependent nitrogen response regulator.
 
     0.806
Sama_1421
KEGG: son:SO1925 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.733
Sama_1471
Membrane-fusion protein; KEGG: ttj:TTHA1006 HlyD family secretion protein.
 
 
 0.724
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.706
Sama_2955
KEGG: son:SO0857 ABC transporter, ATP-binding protein.
 
 
 0.686
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.