STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2932KEGG: son:SO3715 dihydropteridine reductase/oxygen-insensitive NAD(P)H nitroreductase. (217 aa)    
Predicted Functional Partners:
Sama_2407
KEGG: vch:VCA0998 NADH-dependent flavin oxidoreductase, Oye family.
  
 
 0.904
birA
Biotin--(acetyl-CoA-carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.659
Sama_3569
KEGG: sdn:Sden_0824 protein of unknown function DUF181.
  
  
 0.637
Sama_2933
KEGG: sdn:Sden_0724 heat shock protein DnaJ-like protein.
       0.492
Sama_0275
KEGG: sdn:Sden_2365 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.475
Sama_2930
KEGG: eba:ebA6078 hypothetical protein.
       0.460
Sama_2931
KEGG: pae:PA1029 hypothetical protein.
       0.460
Sama_0479
KEGG: son:SO4088 conserved hypothetical protein.
  
  
 0.454
Sama_0480
KEGG: son:SO4087 conserved hypothetical protein.
  
  
 0.454
Sama_0773
ABC-type polysaccharide/polyol phosphate export systems permease component; KEGG: sdn:Sden_0652 ABC-2.
  
  
 0.454
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.