STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3208KEGG: son:SO4205 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Sama_3209
Sec-independent protein translocase TatD; KEGG: son:SO4206 hydrolase, TatD family.
     
 0.829
Sama_3210
Diguanylate cyclase; KEGG: son:SO4207 GGDEF domain protein protein.
     
 0.812
Sama_2486
KEGG: son:SO3364 hypothetical protein.
  
     0.771
Sama_2421
KEGG: son:SO1548 hypothetical protein.
  
     0.769
Sama_2823
KEGG: son:SO3645 hypothetical protein.
  
     0.769
Sama_1124
KEGG: son:SO1612 hypothetical protein.
  
     0.763
Sama_3211
Porphobilinogen synthase; KEGG: son:SO4208 delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
     
 0.748
Sama_2066
KEGG: sdn:Sden_1824 hypothetical protein.
  
     0.744
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
  
  
 0.738
tatB
Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
     
 0.731
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.