STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3223KEGG: ilo:IL0249 hypothetical protein. (469 aa)    
Predicted Functional Partners:
Sama_0708
KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E.
   
 
 0.820
Sama_2459
KEGG: sdn:Sden_3397 acetyltransferase, GNAT family.
  
     0.639
Sama_0400
KEGG: vpa:VP0375 putative lipoprotein.
  
     0.628
Sama_2394
Cyanophycinase-related exopeptidase-like protein; KEGG: ilo:IL2428 secreted protein related to cyanophycinase CphE.
  
     0.581
Sama_2393
KEGG: ccr:CC0579 TonB-dependent receptor.
  
     0.525
Sama_3487
KEGG: vvy:VVA1111 hypothetical protein.
  
     0.514
Sama_1133
KEGG: son:SO1623 PTS system, glucose-specific IIBC component.
    
 
 0.502
prmA
LSU ribosomal protein L11P methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.501
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
  
 
 0.486
Sama_0296
KEGG: pat:Patl_0123 coagulation factor 5/8 type-like.
  
     0.456
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.