STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3328KEGG: sdn:Sden_0280 peptidase S9, prolyl oligopeptidase active site region. (680 aa)    
Predicted Functional Partners:
Sama_3327
KEGG: son:SO0323 hypothetical protein.
       0.574
Sama_2415
Protease, putative; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
    0.475
Sama_0669
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03; KEGG: son:SO0741 gamma-glutamyltranspeptidase.
  
     0.472
Sama_3329
KEGG: son:SO0322 hypothetical protein.
       0.463
Sama_3132
KEGG: ilo:IL1207 predicted metal-dependent amidohydrolase with the TIM-barrel fold.
 
     0.451
Sama_3326
KEGG: vpa:VPA0976 hypothetical protein.
       0.422
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.