STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3451KEGG: son:SO4559 hypothetical protein. (475 aa)    
Predicted Functional Partners:
Sama_3452
KEGG: son:SO4560 hypothetical protein.
       0.761
Sama_3003
KEGG: son:SO0625 hypothetical protein.
  
     0.747
Sama_2228
KEGG: son:SO1659 decaheme cytochrome c.
  
     0.706
Sama_1209
KEGG: son:SO1779 decaheme cytochrome c.
 
     0.703
Sama_1603
KEGG: son:SO1854 hypothetical protein.
  
     0.702
Sama_1210
KEGG: son:SO1779 decaheme cytochrome c.
  
     0.701
Sama_1211
KEGG: son:SO1780 decaheme cytochrome c MtrF.
  
     0.695
Sama_2746
KEGG: son:SO0943 sensory box protein, putative.
  
     0.644
Sama_3453
KEGG: son:SO4561 hypothetical protein.
 
     0.633
Sama_1212
KEGG: son:SO1781 outer membrane protein, putative.
  
     0.629
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.