STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3515Conserved hypothetical protein; KEGG: son:SO3697 steroid delta-isomerase domain protein. (154 aa)    
Predicted Functional Partners:
Sama_3516
KEGG: hch:HCH_03985 histone acetyltransferase HPA2/related acetyltransferase.
       0.773
Sama_0430
Putative transcriptional regulator, CadC; KEGG: son:SO1699 transcriptional regulator.
  
    0.602
Sama_1188
KEGG: son:SO1751 hypothetical protein.
  
     0.548
Sama_1167
KEGG: ilo:IL1717 secreted enzyme, contains two amidohydrolase related domains.
  
     0.482
Sama_0662
KEGG: son:SO0748 hypothetical protein.
  
     0.476
Sama_3514
Hypothetical protein.
       0.474
Sama_2999
KEGG: son:SO0881 hypothetical protein.
  
     0.449
Sama_1166
KEGG: son:SO3149 hypothetical protein.
  
     0.434
Sama_1061
KEGG: son:SO1002 hypothetical protein.
  
     0.423
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.