STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3616KEGG: son:SO4506 iron-sulfur cluster-binding protein. (580 aa)    
Predicted Functional Partners:
Sama_3615
KEGG: son:SO4507 TorA specific chaperone, putative.
 
  
 0.968
Sama_3613
KEGG: son:SO4509 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.945
Sama_3550
KEGG: hch:HCH_01282 predicted nucleoside-diphosphate-sugar epimerase.
  
 0.931
Sama_0611
KEGG: son:SO0970 fumarate reductase flavoprotein subunit precursor; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.929
Sama_1425
KEGG: son:SO1928 succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.929
Sama_2401
KEGG: wsu:WS0124 flavocytochrome c flavin subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.929
Sama_3220
KEGG: son:SO0398 fumarate reductase flavoprotein subunit.
  
 
 0.929
Sama_1444
Cytochrome c3; KEGG: son:SO2727 cytochrome c3.
  
 
 0.928
Sama_3021
Ubiquinol--cytochrome-c reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.926
Sama_3609
KEGG: son:SO4513 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.925
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.