STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3641KEGG: son:SO4743 TonB-dependent receptor, putative. (697 aa)    
Predicted Functional Partners:
Sama_1540
KEGG: son:SO1944 hypothetical protein.
  
  
 0.713
Sama_2747
KEGG: son:SO0942 hypothetical protein.
  
     0.660
Sama_1838
KEGG: son:SO2427 TonB-dependent receptor, putative.
  
  
 0.640
Sama_1394
KEGG: pat:Patl_2402 TonB-dependent receptor, plug.
  
  
 0.619
Sama_3413
KEGG: cps:CPS_2723 putative iron-regulated membrane protein.
 
  
 0.606
Sama_2052
KEGG: son:SO2622 hypothetical protein.
  
   
 0.543
Sama_2664
KEGG: son:SO3761 hypothetical protein.
  
     0.539
Sama_1399
KEGG: sdn:Sden_2610 TonB-dependent receptor.
 
  
 0.536
Sama_2558
KEGG: sdn:Sden_0769 hypothetical protein.
  
     0.535
Sama_2810
KEGG: son:SO1190 hypothetical protein.
 
  
 0.515
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.