STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB43345.1ABC transporter-related protein. (260 aa)    
Predicted Functional Partners:
ABB43344.1
Hypothetical protein.
  
 0.999
ABB43343.1
Cobalamin (vitamin B12) biosynthesis CbiM protein.
 
 0.998
ABB43340.1
Hypothetical protein.
    
 0.958
ABB44816.1
ABC transporter-related protein.
    
0.915
ABB45167.1
ABC transporter-related protein.
 
    
0.910
ABB45316.1
ABC transporter-related protein.
 
    
0.827
ABB43341.1
Hypothetical protein.
     
 0.803
ABB43342.1
Hypothetical protein.
       0.780
ABB44593.1
ABC transporter-related protein.
 
    
0.651
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.559
Your Current Organism:
Sulfurimonas denitrificans
NCBI taxonomy Id: 326298
Other names: S. denitrificans DSM 1251, Sulfurimonas denitrificans DSM 1251, Thiomicrospira denitrificans ATCC 33889
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.