STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB44721.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.774
ABB44717.1
Resistance-Nodulation-Cell Division Superfamily transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.768
ABB44718.1
Putative efflux transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.768
ABB44719.1
Outer membrane efflux protein.
       0.768
ABB44720.1
Endoribonuclease L-PSP.
       0.768
ABB44723.1
DNA mismatch repair protein MutS.
       0.594
ABB44714.1
Nickel-dependent hydrogenase, large subunit.
       0.466
ABB44715.1
Ni-Fe hydrogenase, small subunit.
       0.466
ABB44716.1
Transcriptional regulator, TetR family.
       0.466
Your Current Organism:
Sulfurimonas denitrificans
NCBI taxonomy Id: 326298
Other names: S. denitrificans DSM 1251, Sulfurimonas denitrificans DSM 1251, Thiomicrospira denitrificans ATCC 33889
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.