STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB44940.1Hypothetical protein. (575 aa)    
Predicted Functional Partners:
ABB43974.1
Hypothetical protein.
  
     0.755
ABB44869.1
Hypothetical protein.
  
     0.755
ABB43517.1
Hypothetical protein.
  
 
   0.733
ABB45358.1
WD-40 repeat.
 
     0.710
ABB44013.1
Hypothetical protein.
  
 
   0.642
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
   0.605
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
   0.577
ABB43288.1
TonB-dependent receptor.
  
   
 0.565
ABB43937.1
Hypothetical protein.
  
     0.557
ABB43744.1
Histidine kinase.
  
    0.542
Your Current Organism:
Sulfurimonas denitrificans
NCBI taxonomy Id: 326298
Other names: S. denitrificans DSM 1251, Sulfurimonas denitrificans DSM 1251, Thiomicrospira denitrificans ATCC 33889
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.