STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB45286.1Secretion protein HlyD. (352 aa)    
Predicted Functional Partners:
ABB45285.1
Resistance-Nodulation-Cell Division Superfamily transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.969
ABB45287.1
Hypothetical protein.
  
   0.827
ABB44161.1
Resistance-Nodulation-Cell Division Superfamily transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.772
ABB44160.1
Cation efflux system protein.
  
   
 0.682
ABB44463.1
Conserved hypothetical protein.
  
     0.677
ABB45288.1
Hypothetical protein.
       0.648
ABB44462.1
Putative protein.
  
     0.596
ABB45317.1
Protein of unknown function DUF214.
  
 
 0.527
ABB45284.1
Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
       0.524
ABB45289.1
Diguanylate cyclase (GGDEF domain).
       0.472
Your Current Organism:
Sulfurimonas denitrificans
NCBI taxonomy Id: 326298
Other names: S. denitrificans DSM 1251, Sulfurimonas denitrificans DSM 1251, Thiomicrospira denitrificans ATCC 33889
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