STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL0530Putative HTH-type transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator. (233 aa)    
Predicted Functional Partners:
FRAAL0529
Putative oxidoreductase (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
   0.669
FRAAL3595
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.495
FRAAL3687
Hypothetical protein; No homology to any previously reported sequences.
  
   
 0.470
FRAAL1943
Putative AraC-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
   
 0.456
FRAAL3926
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.444
FRAAL0621
Putative TetR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.441
FRAAL1144
Putative ABC transporter substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
     0.440
FRAAL3933
Putative glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.440
FRAAL4039
Putative phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.431
FRAAL3916
Hypothetical protein; No homology to any previously reported sequences.
  
     0.419
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.