STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL0832Putative anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor. (121 aa)    
Predicted Functional Partners:
sigH
SigH putative RNA polymerase sigma factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
 
 0.939
FRAAL6080
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.770
FRAAL0944
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.756
FRAAL5373
Hypothetical protein; No homology to any previously reported sequences.
  
     0.746
FRAAL2127
Putative regulator (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.745
FRAAL5533
Putative SsgA-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.742
FRAAL6494
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.735
FRAAL4194
Putative hybrid sensor histidine kinase/response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
 
 0.709
FRAAL4514
Hypothetical protein; No homology to any previously reported sequences.
  
     0.697
FRAAL6574
Anti-sigma-B factor antagonist (Anti-anti-sigma-B factor); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.673
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.