STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureAUrease gamma subunit; Function of strongly homologous gene; enzyme; Belongs to the urease gamma subunit family. (100 aa)    
Predicted Functional Partners:
ureC
Urease alpha subunit; Function of strongly homologous gene; enzyme; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 0.999
ureB
Urease beta subunit (Urea amidohydrolase beta subunit) (partial); Function of strongly homologous gene; enzyme; Belongs to the urease beta subunit family.
 0.999
ureG
Urease accessory protein ureG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
  
 0.950
FRAAL6407
Putative glutamyl-tRNA(Gln) amidotransferase subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
     
  0.900
ureF
Urease accessory protein UreF; Function of strongly homologous gene.
 
 
 0.899
ureD
Putative urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.832
hypB2
Hydrogenase nickel incorporation protein; Function of strongly homologous gene; enzyme.
  
  
 0.578
hypB1
Hydrogenase nickel incorporation protein HypB; Function of strongly homologous gene; enzyme.
  
  
 0.578
gltB
Glutamate synthase, large subunit; Function of strongly homologous gene; enzyme.
      
 0.507
hemE
Uroporphyrinogen decarboxylase (partial match); Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.497
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.