STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxAFerredoxin (partial match); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (140 aa)    
Predicted Functional Partners:
FRAAL3253
Pyruvate-flavodoxin oxidoreductase; Function of strongly homologous gene; enzyme.
  
  
 0.928
FRAAL1470
Hypothetical protein; No homology to any previously reported sequences.
       0.779
FRAAL1051
Putative oxidoreductase,alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 0.611
FRAAL6799
Ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 0.611
icd
Isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH); Function of strongly homologous gene; enzyme; Belongs to the monomeric-type IDH family.
  
  
 0.609
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.593
FRAAL1471
Putative LysR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator; Belongs to the LysR transcriptional regulatory family.
     
 0.503
FRAAL4319
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.432
cysC
Adenosine 5'-phosphosulfate kinase (partial match); Function of strongly homologous gene; enzyme.
     
 0.416
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.