STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xisExcisionase; Function of strongly homologous gene; RNA. (61 aa)    
Predicted Functional Partners:
repSA
Replication initiator protein; Function of strongly homologous gene; enzyme.
 
   
 0.828
traSA
Plasmid transfer protein; Function of strongly homologous gene; enzyme.
 
   
 0.824
pra
Plasmid replication, integration and excision activator; Function of strongly homologous gene; regulator.
 
     0.657
FRAAL1738
Hypothetical protein; No homology to any previously reported sequences; Belongs to the 'phage' integrase family.
 
   
 0.615
FRAAL3662
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.572
int-2
Integrase (Recombinase); Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
 
   
 0.556
FRAAL1739
Putative integrase (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
   
 0.536
repSA-2
Replication initiator protein; Function of strongly homologous gene; enzyme.
 
   
 0.514
traSA-2
Plasmid transfer protein; Function of strongly homologous gene; enzyme.
 
   
 0.489
FRAAL1736
Hypothetical protein; No homology to any previously reported sequences.
       0.479
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.