Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
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experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FRAAL1995Putative Ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier. (62 aa)    
Predicted Functional Partners:
FRAAL1994
Hypothetical protein; No homology to any previously reported sequences.
       0.538
FRAAL3253
Pyruvate-flavodoxin oxidoreductase; Function of strongly homologous gene; enzyme.
     
 0.510
pqqE
Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone biosynthesis protein E); Function of strongly homologous gene; enzyme.
  
     0.495
FRAAL1996
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family.
       0.493
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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