Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FRAAL1998Putative Competence protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (882 aa)    
Predicted Functional Partners:
FRAAL1999
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 0.989
FRAAL1997
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.964
FRAAL5783
Putative DNA processing Smf-family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
 
  
 0.912
FRAAL1185
Putative ATP-dependent DNA helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 0.854
FRAAL5248
Putative integral membrane peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 0.829
FRAAL1302
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.801
recA
DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
  
 0.778
FRAAL1280
Putative regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
    0.751
pheT
Phenylalanine tRNA synthetase, beta-subunit; Function of strongly homologous gene; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.732
recX
Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family.
 
   
 0.712
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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