STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL3003Conserved hypothetical protein; No homology to any previously reported sequences. (291 aa)    
Predicted Functional Partners:
FRAAL5620
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.777
FRAAL0146
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.776
FRAAL0518
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.769
FRAAL6351
Putative regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.761
FRAAL5502
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.760
FRAAL5617
Putative AbaA-like regulator protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.759
FRAAL5501
Putative regulatory protein (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.758
FRAAL0517
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.756
FRAAL6352
Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.751
FRAAL6347
Putative protein; No homology to any previously reported sequences.
  
     0.599
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.