STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL3349Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (240 aa)    
Predicted Functional Partners:
FRAAL3348
Putative Fe4-S4 ferredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier.
 
 0.997
FRAAL3347
Hypothetical protein; No homology to any previously reported sequences.
 
 0.975
FRAAL3253
Pyruvate-flavodoxin oxidoreductase; Function of strongly homologous gene; enzyme.
  
  
 0.689
FRAAL1569
Glycerol-3-phosphate oxidase; Function of strongly homologous gene; enzyme; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.468
FRAAL3861
Putative glycolate oxidoreductase (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 0.414
FRAAL5480
Putative glycolate oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 0.403
gapA
Glyceraldehyde-3-phosphate dehydrogenase A; Function of strongly homologous gene; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.402
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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