STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL3919Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (87 aa)    
Predicted Functional Partners:
lig
ATP-dependent DNA ligase (LigC); Function of strongly homologous gene; enzyme.
  
     0.640
FRAAL6305
Putative tetR-family transcriptional represor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.567
FRAAL5813
Hypothetical protein; No homology to any previously reported sequences.
  
     0.545
FRAAL3991
Putative transcriptional regulator of the TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.542
FRAAL1208
Hypothetical protein; No homology to any previously reported sequences.
  
     0.506
FRAAL0558
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.496
FRAAL1972
Putative tetR-family regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.477
FRAAL3918
Hypothetical membrane protein; No homology to any previously reported sequences.
       0.470
FRAAL4530
Hypothetical protein; No homology to any previously reported sequences.
  
     0.470
FRAAL4738
Putative LuxR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.426
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.