Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL4100Hypothetical protein; No homology to any previously reported sequences. (233 aa)    
Predicted Functional Partners:
FRAAL4099
Hypothetical protein; No homology to any previously reported sequences.
       0.709
FRAAL4101
Putative membrane component of ABC-type dipeptide/oligopeptide/nickel transport systems; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
       0.705
FRAAL4098
Hypothetical protein; No homology to any previously reported sequences.
      
0.572
FRAAL4102
Putative ABC transporter component, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
       0.471
FRAAL4103
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
       0.471
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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