STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL4250Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (427 aa)    
Predicted Functional Partners:
FRAAL4257
Putative creatinine amidohydrolase (creatininase); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  
  0.970
FRAAL5874
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
  0.941
upp
Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase); Function of strongly homologous gene; enzyme; Belongs to the UPRTase family.
  
 
 0.928
FRAAL4252
Putative ABC transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
    0.917
deoD
Purine nucleoside phosphorylase (Inosine phosphorylase) (PNP); The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.916
deoA
Thymidine phosphorylase; Function of strongly homologous gene; enzyme.
    
 0.912
psuG
Conserved hypothetical protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.
  
  
  0.912
pyrR
PyrR bifunctional protein [Includes: Pyrimidine operon regulatory protein; Function of strongly homologous gene; enzyme.
    
 0.907
FRAAL4253
Hypothetical protein; No homology to any previously reported sequences.
 
     0.889
FRAAL4254
Putative FAD/FMN-containing dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
   
 0.875
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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