STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL4564Putative DNA-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator. (299 aa)    
Predicted Functional Partners:
sufB
Transport protein associated with Fe-S cluster assembly; Function of strongly homologous gene; transporter.
  
  
 0.957
FRAAL4558
NifU-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.857
FRAAL4562
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.840
FRAAL4561
Putative dioxygenase ferredoxin subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
       0.794
sufC
Transport protein associated with Fe-S cluster assembly; Function of strongly homologous gene; transporter.
  
    0.788
csdB
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.772
FRAAL4557
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.767
FRAAL5048
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.678
FRAAL5864
Putative MarR-family transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
    0.655
FRAAL4591
Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.602
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.