STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL4598Putative serine/threonine-protein kinase with WD40 domains; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (869 aa)    
Predicted Functional Partners:
FRAAL6046
Transcriptional regulator (MerR-family); Function of strongly homologous gene; regulator.
 
   0.797
pphA
Serine/threonine specific protein phosphatase; Function of strongly homologous gene; enzyme.
  
   0.794
FRAAL6686
Hypothetical protein; No homology to any previously reported sequences.
  
   0.790
FRAAL3896
Putative protein phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
   0.780
FRAAL6518
Hypothetical protein; No homology to any previously reported sequences.
  
   0.770
FRAAL0248
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.559
FRAAL6332
Putative ATP-dependent helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 0.559
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.520
FRAAL4192
Hypothetical protein; No homology to any previously reported sequences.
 
 0.508
FRAAL0854
Hypothetical protein; No homology to any previously reported sequences.
   
 0.507
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.