STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL6009Putative anti-sigma factor (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor. (81 aa)    
Predicted Functional Partners:
FRAAL6010
RNA polymerase ECF-subfamily sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.969
FRAAL0949
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.728
FRAAL6550
Putative ion-transporting ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
     0.656
FRAAL6549
Putative anion-transporting ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
     0.637
FRAAL1214
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.621
FRAAL6011
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.606
FRAAL6564
Hypothetical protein; No homology to any previously reported sequences.
  
     0.599
FRAAL2772
Putative site-specific integrase-resolvase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.598
FRAAL0944
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.586
FRAAL0134
Putative DNA-binding protein (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.568
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.