STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL6380Putative D-isomer specific 2-hydroxyacid dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (306 aa)    
Predicted Functional Partners:
serC
Phosphoserine aminotransferase (PSAT); Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 
 0.701
FRAAL6381
Putative aminotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.625
cysC
Adenosine 5'-phosphosulfate kinase (partial match); Function of strongly homologous gene; enzyme.
   
  
 0.622
acuC
Acetoin dehydrogenase; Function of strongly homologous gene; enzyme.
   
 0.512
FRAAL4224
Hypothetical protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 0.509
FRAAL2557
Non-ribosomal peptide synthetase (Fragment); Function of strongly homologous gene; enzyme.
  
 
 0.485
FRAAL3357
Putative Septum formation protein MaF; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
   0.474
FRAAL3674
Putative kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
   
  0.473
FRAAL4043
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.472
hom
Homoserine dehydrogenase (HDH); Function of strongly homologous gene; enzyme.
  
 
 0.462
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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