STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL6563Hypothetical protein; No homology to any previously reported sequences. (170 aa)    
Predicted Functional Partners:
FRAAL6562
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
     0.664
FRAAL6564
Hypothetical protein; No homology to any previously reported sequences.
 
     0.589
FRAAL4923
Putative Regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
  
     0.459
FRAAL0334
Activator protein; Function of strongly homologous gene; regulator.
  
     0.457
FRAAL4078
Putative SARP family pathway specific transcriptional activator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
     0.440
FRAAL4146
Hypothetical protein; No homology to any previously reported sequences.
  
     0.437
hemD
uroporphyrin-III C-methyltransferase; Function of strongly homologous gene; enzyme.
 
    0.419
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.