STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL6837Class I peptide chain release factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor. (104 aa)    
Predicted Functional Partners:
rplU
50S ribosomal protein L21 (partial); Function of strongly homologous gene; structural protein.
  
   0.892
rpmA
50S ribosomal protein L27; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.841
rpsG
30S ribosomal subunit protein S7, initiates assembly; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.833
rpsP
30S ribosomal protein S16; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.832
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.829
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
  
 
 0.818
rpmJ
50S ribosomal subunit protein L36; Function of strongly homologous gene; structural protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.817
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.804
rplQ
50S ribosomal protein L17; Function of strongly homologous gene; structural protein.
   
   0.797
rplP
50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
  
 0.794
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.