STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0177TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cau:Caur_2732 ParB-like partition protein; Belongs to the ParB family. (350 aa)    
Predicted Functional Partners:
Cagg_0277
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rca:Rcas_2365 cobyrinic acid ac-diamide synthase.
 
 
 0.926
Cagg_0576
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cau:Caur_3515 cobyrinic acid ac-diamide synthase.
 
 
 0.926
Cagg_2138
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cau:Caur_1422 cobyrinic acid ac-diamide synthase.
 
 
 0.926
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.778
Cagg_1733
KEGG: cau:Caur_0907 ATPase involved in chromosome partitioning-like protein.
 
 
 0.761
Cagg_0638
KEGG: cau:Caur_2801 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD.
  
 
 
 0.757
Cagg_2352
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cau:Caur_1228 cell divisionFtsK/SpoIIIE.
  
   
 0.697
Cagg_3586
KEGG: cau:Caur_0345 hypothetical protein.
 
 
 0.552
Cagg_0176
PFAM: Patatin; KEGG: cau:Caur_3137 patatin.
       0.538
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.536
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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