STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0199PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cau:Caur_3584 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (447 aa)    
Predicted Functional Partners:
Cagg_1150
KEGG: cau:Caur_0227 hypothetical protein.
     0.923
Cagg_1296
PFAM: ferredoxin; KEGG: cau:Caur_0356 ferredoxin.
  
 
 0.836
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cau:Caur_2057 phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.714
Cagg_0304
PFAM: FAD dependent oxidoreductase; KEGG: LOC100059605; similar to L-pipecolic acid oxidase; K00301 sarcosine oxidase.
  
 
 0.695
Cagg_0359
PFAM: FAD dependent oxidoreductase; KEGG: cau:Caur_3609 FAD dependent oxidoreductase.
  
 
 0.695
Cagg_0436
PFAM: FAD dependent oxidoreductase; KEGG: cau:Caur_3880 FAD dependent oxidoreductase.
  
 
 0.695
Cagg_3120
PFAM: FAD dependent oxidoreductase; KEGG: cau:Caur_0422 FAD dependent oxidoreductase.
  
 
 0.695
Cagg_3421
PFAM: FAD dependent oxidoreductase; KEGG: cau:Caur_0564 FAD dependent oxidoreductase.
  
 
 0.695
Cagg_2640
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: rrs:RoseRS_0969 riboflavin synthase subunit alpha.
   
    0.642
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
    0.642
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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