Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Cagg_0331PFAM: protein of unknown function DUF583; KEGG: cau:Caur_3244 hypothetical protein. (138 aa)    
Predicted Functional Partners:
Cagg_1204
Transcriptional regulator, XRE family; PFAM: Peptidase M23; SMART: helix-turn-helix domain protein; KEGG: cau:Caur_0144 peptidase M23B.
 
   
 0.562
Cagg_0330
PFAM: Septum formation initiator; KEGG: cau:Caur_3245 septum formation initiator.
       0.521
Cagg_1572
PFAM: Peptidase M23; KEGG: cau:Caur_1886 peptidase M23B.
 
   
 0.484
Cagg_0332
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.458
Cagg_1763
PFAM: Peptidase M23; KEGG: cau:Caur_1101 peptidase M23B.
 
   
 0.433
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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