STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cagg_0366PFAM: TPR repeat-containing protein; transcriptional activator domain; SMART: Tetratricopeptide domain protein; KEGG: cau:Caur_3619 transcriptional activator domain-containing protein. (1097 aa)    
Predicted Functional Partners:
Cagg_2054
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cau:Caur_0894 ATPase domain-containing protein.
 
  
 0.669
Cagg_1686
PFAM: extracellular solute-binding protein family 1; KEGG: cau:Caur_1078 extracellular solute-binding protein.
  
    0.652
Cagg_0090
PFAM: extracellular solute-binding protein family 1; KEGG: cau:Caur_3857 extracellular solute-binding protein.
  
    0.594
Cagg_0368
PFAM: alpha/beta hydrolase fold; KEGG: cau:Caur_3629 alpha/beta hydrolase fold-containing protein.
 
     0.548
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.538
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.532
Cagg_0367
PFAM: AMP-dependent synthetase and ligase; KEGG: cau:Caur_3628 AMP-dependent synthetase and ligase.
       0.529
Cagg_0441
KEGG: cau:Caur_3883 hypothetical protein.
  
     0.495
Cagg_0533
KEGG: cau:Caur_3573 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.485
Cagg_0804
KEGG: cau:Caur_3766 hypothetical protein.
  
     0.477
Your Current Organism:
Chloroflexus aggregans
NCBI taxonomy Id: 326427
Other names: C. aggregans DSM 9485, Chloroflexus aggregans DSM 9485, Chloroflexus aggregans MD-66, Chloroflexus aggregans str. DSM 9485, Chloroflexus aggregans strain DSM 9485
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